BioSeqAnalyzer is a bioinformatics software tool for analyzing DNA and protein sequences.

Its Windows interface makes sequence analysis extremely easy.

BioSeqAnalyzer, registered version, supports the following operations: Alignment Scoring.

Linear global alignment.

Affine global alignment.

Local alignment.

Multiple alignment.

Hidden Markov Models Profile creation.

Aligning to Hidden Markov Models Profiles.

Composition-based classification.

Profile-based classification.

All functions can be performed on both DNA and protein sequences.

BioSeqAnalyzer brings to sequence analysis the following GUI features: Enter sequences either from the keyboard or from FASTA files.

Select a FASTA file from a list of previously-used files.

Select a sequence from within a multi-sequence FASTA file using a simple listbox.

Select substitution score matrix with a single click.

View alignments in either wide, or wrap-around format.

View or hide Dynamic Programming matrices.

Create and save HMM profiles.

Align sequences to a previous-saved HMM profiles.

Much more.